DGtal::DicomReader< TImageContainer, TFunctor > Struct Template Reference

Aim: Import a 3D DICOM image from file series. More...

#include <DGtal/io/readers/DicomReader.h>

Data Structures
struct	Aux
struct	Aux< ImageContainerByITKImage< Domain, OutPixelType >, Domain, OutPixelType, PixelType >

Public Types
typedef TImageContainer	ImageContainer
typedef TImageContainer::Value	Value
typedef TFunctor	Functor
typedef int32_t	PixelType

Public Member Functions
	BOOST_CONCEPT_ASSERT ((concepts::CImage< ImageContainer >))
	BOOST_CONCEPT_ASSERT ((concepts::CUnaryFunctor< Functor, PixelType, Value >))
	BOOST_STATIC_ASSERT ((TImageContainer::Domain::dimension==3))

Static Public Member Functions
static ImageContainer	importDicom (const std::string &aFilename, const Functor &aFunctor=Functor())
static ImageContainer	importDicomSeries (const std::vector< std::string > &filenames, const Functor &aFunctor=Functor())

Static Private Member Functions
template<typename Domain, typename PixelType>
static ImageContainerByITKImage< Domain, PixelType >	importDicomFiles_ (const std::vector< std::string > &filenames)
template<typename PixelType>
static TImageContainer	importDicomFiles (const std::vector< std::string > &filenames, const TFunctor &aFunctor)

Detailed Description

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>
struct DGtal::DicomReader< TImageContainer, TFunctor >

Aim: Import a 3D DICOM image from file series.

Description of class 'DicomReader'

This class requires ITK installation (http://www.itk.org/ITK/resources/software.html) and to compile DGtal with -DDGTAL_WITH_ITK option.

Simple example: (extract from test/io/readers/testDicomReader.cpp)

#include "DGtal/images/ImageContainerBySTLVector.h"
#include "DGtal/helpers/StdDefs.h"
#include "DGtal/io/readers/DicomReader.h"
 
...
 
typedef ImageContainerBySTLVector<DGtal::Z3i::Domain, unsigned char > Image3D;
string filename = "test.dcm";
Image3D image = DicomReader< Image3D, Rescaling<int32_t,Image3D::Value> >::importDicom(
                                                               filename, Rescaling<int32_t,Image3D::Value>(-900,530,0,255) );

Template Parameters

TImageContainer	the type of the image container
TFunctor	the type of functor used in the import (you can use the Rescaling as in the example above).

Definition at line 91 of file DicomReader.h.

Member Typedef Documentation

Functor

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

typedef TFunctor DGtal::DicomReader< TImageContainer, TFunctor >::Functor

Definition at line 98 of file DicomReader.h.

ImageContainer

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

typedef TImageContainer DGtal::DicomReader< TImageContainer, TFunctor >::ImageContainer

Definition at line 96 of file DicomReader.h.

PixelType

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

typedef int32_t DGtal::DicomReader< TImageContainer, TFunctor >::PixelType

Definition at line 99 of file DicomReader.h.

Value

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

typedef TImageContainer::Value DGtal::DicomReader< TImageContainer, TFunctor >::Value

Definition at line 97 of file DicomReader.h.

Member Function Documentation

BOOST_CONCEPT_ASSERT() [1/2]

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

DGtal::DicomReader< TImageContainer, TFunctor >::BOOST_CONCEPT_ASSERT

(

(concepts::CImage< ImageContainer >)

)

BOOST_CONCEPT_ASSERT() [2/2]

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

DGtal::DicomReader< TImageContainer, TFunctor >::BOOST_CONCEPT_ASSERT

(

(concepts::CUnaryFunctor< Functor, PixelType, Value >)

)

BOOST_STATIC_ASSERT()

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

DGtal::DicomReader< TImageContainer, TFunctor >::BOOST_STATIC_ASSERT

(

(TImageContainer::Domain::dimension==3)

)

importDicom()

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

ImageContainer DGtal::DicomReader< TImageContainer, TFunctor >::importDicom ( const std::string & aFilename, const Functor & aFunctor = Functor() )

static

Main method to import a Dicom serie into an instance of the template parameter ImageContainer.

Parameters

aFilename	one file of the serie to import.
aFunctor	the functor used to import and cast the source image values into the type of the image container value (by default set to functors::Cast < TImageContainer::Value >.

Returns

an instance of the ImageContainer.

Referenced by DGtal::GenericReader< TContainer, 3, DGtal::uint32_t >::importWithValueFunctor(), DGtal::GenericReader< TContainer, 3, TValue >::importWithValueFunctor(), testDicomReader(), and testIOException().

importDicomFiles()

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

template<typename PixelType>

TImageContainer DGtal::DicomReader< TImageContainer, TFunctor >::importDicomFiles ( const std::vector< std::string > & filenames, const TFunctor & aFunctor )

inlinestaticprivate

importDicomFiles_()

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

template<typename Domain, typename PixelType>

ImageContainerByITKImage< Domain, PixelType > DGtal::DicomReader< TImageContainer, TFunctor >::importDicomFiles_ ( const std::vector< std::string > & filenames )

inlinestaticprivate

importDicomSeries()

template<typename TImageContainer, typename TFunctor = functors::Cast< typename TImageContainer::Value >>

ImageContainer DGtal::DicomReader< TImageContainer, TFunctor >::importDicomSeries ( const std::vector< std::string > & filenames, const Functor & aFunctor = Functor() )

static

Main method to import a Dicom serie into an instance of the template parameter ImageContainer.

Parameters

filenames	files of the serie to import.
aFunctor	the functor used to import and cast the source image values into the type of the image container value (by default set to functors::Cast < TImageContainer::Value >.

Returns

an instance of the ImageContainer.

Referenced by testDicomReaderFromDirectory(), and testSpatialInformation().

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The documentation for this struct was generated from the following file:

• DicomReader.h