volTrackBoundary.cpp

Go to the documentation of this file.

 

#include <iostream>
#include <queue>
#include "DGtal/base/Common.h"
#include "DGtal/io/viewers/PolyscopeViewer.h"
#include "DGtal/io/readers/VolReader.h"
#include "DGtal/io/Color.h"
#include "DGtal/images/ImageSelector.h"
#include "DGtal/images/imagesSetsUtils/SetFromImage.h"
#include "DGtal/shapes/Shapes.h"
#include "DGtal/helpers/StdDefs.h"
#include "DGtal/topology/helpers/Surfaces.h"

 
using namespace std;
using namespace DGtal;
using namespace Z3i;

 
void usage( int /*argc*/, char** argv )
{
  std::cerr << "Usage: " << argv[ 0 ] << " <fileName.vol> <minT> <maxT>" << std::endl;
  std::cerr << "\t - displays the boundary of the shape stored in vol file <fileName.vol>." << std::endl;
  std::cerr << "\t - voxel v belongs to the shape iff its value I(v) follows minT <= I(v) <= maxT." << std::endl;
}
 
int main( int argc, char** argv )
{
  if ( argc < 4 )
    {
      usage( argc, argv );
      return 1;
    }
  std::string inputFilename = argv[ 1 ];
  unsigned int minThreshold = atoi( argv[ 2 ] );
  unsigned int maxThreshold = atoi( argv[ 3 ] );

  trace.beginBlock( "Reading vol file into an image." );
  typedef ImageSelector < Domain, int>::Type Image;
  Image image = VolReader<Image>::importVol(inputFilename);
  DigitalSet set3d (image.domain());
  SetFromImage<DigitalSet>::append<Image>(set3d, image,
                                          minThreshold, maxThreshold);
  trace.endBlock();
 

  trace.beginBlock( "Construct the Khalimsky space from the image domain." );
  KSpace ks;
  bool space_ok = ks.init( image.domain().lowerBound(),
                           image.domain().upperBound(), true );
  if (!space_ok)
    {
      trace.error() << "Error in the Khamisky space construction."<<std::endl;
      return 2;
    }
  trace.endBlock();

  typedef SurfelAdjacency<KSpace::dimension> MySurfelAdjacency;
  MySurfelAdjacency surfAdj( true ); // interior in all directions.

  trace.beginBlock( "Extracting boundary by tracking from an initial bel." );
  KSpace::SCellSet boundary;
  SCell bel = Surfaces<KSpace>::findABel( ks, set3d, 100000 );
  Surfaces<KSpace>::trackBoundary( boundary, ks,
                                   surfAdj,
                                   set3d, bel );
  trace.endBlock();

  trace.beginBlock( "Displaying surface in PolyscopeViewer." );
  PolyscopeViewer<> viewer( ks );
  viewer << Color( 128, 128, 128 );
  unsigned long nbSurfels = 0;
  for ( KSpace::SCellSet::const_iterator it = boundary.begin(),
          it_end = boundary.end(); it != it_end; ++it, ++nbSurfels )
    viewer << *it;
  trace.info() << "nb surfels = " << nbSurfels << std::endl;
  trace.endBlock();
  viewer.show();
  return 0;
}